mrmeshpy.VoxelsLoad Class Reference

Classes
class	DicomStatus
class	DicomStatusEnum
class	DicomVolume
class	DicomVolumeAsVdb
class	GridType
class	LoadingTiffSettings
class	RawParameters

Static Public Member Functions
ObjectVoxels	createObjectVoxels (VoxelsLoad.DicomVolumeAsVdb dcm, func_bool_from_float cb='{}')
std_vector_std_filesystem_path	findDicomFoldersRecursively (os.PathLike|str|bytes path)
VoxelsLoad.RawParameters	findRawParameters (os.PathLike|str|bytes file)
std_vector_VoxelsVolumeMinMax_FloatGrid	fromAnySupportedFormat (os.PathLike|str|bytes file, func_bool_from_float cb='{}')
VdbVolume	fromGav (os.PathLike|str|bytes file, func_bool_from_float cb='{}')
VdbVolume	fromGav (typing.Any in_, func_bool_from_float cb='{}')
VdbVolume	fromRaw (os.PathLike|str|bytes file, VoxelsLoad.RawParameters params, func_bool_from_float cb='{}')
VdbVolume	fromRaw (os.PathLike|str|bytes file, func_bool_from_float cb='{}')
VdbVolume	fromRaw (typing.Any in_, VoxelsLoad.RawParameters params, func_bool_from_float cb='{}')
std_vector_VoxelsVolumeMinMax_FloatGrid	fromVdb (os.PathLike|str|bytes file, func_bool_from_float cb='{}')
FloatGrid	gridFromRaw (os.PathLike|str|bytes file, VoxelsLoad.RawParameters params, func_bool_from_float cb='{}')
FloatGrid	gridFromRaw (os.PathLike|str|bytes file, func_bool_from_float cb='{}')
FloatGrid	gridFromRaw (typing.Any in_, VoxelsLoad.RawParameters params, func_bool_from_float cb='{}')
std_vector_FloatGrid	gridsFromAnySupportedFormat (os.PathLike|str|bytes file, func_bool_from_float cb='{}')
std_vector_FloatGrid	gridsFromVdb (os.PathLike|str|bytes file, func_bool_from_float cb='{}')
std_vector_FloatGrid	gridsFromVdb (typing.Any in_, func_bool_from_float cb='{}')
VoxelsLoad.DicomStatus	isDicomFile (os.PathLike|str|bytes path, std_string_output seriesUid=None)
bool	isDicomFolder (os.PathLike|str|bytes dirPath)
VoxelsLoad.DicomVolume	loadDicomFile (os.PathLike|str|bytes file, func_bool_from_float cb='{}')
VoxelsLoad.DicomVolumeAsVdb	loadDicomFileAsVdb (os.PathLike|str|bytes file, func_bool_from_float cb='{}')
VoxelsLoad.DicomVolume	loadDicomFolder (os.PathLike|str|bytes path, int maxNumThreads, func_bool_from_float cb='{}')
VoxelsLoad.DicomVolumeAsVdb	loadDicomFolderAsVdb (os.PathLike|str|bytes path, int maxNumThreads, func_bool_from_float cb='{}')
std_vector_tl_expected_VoxelsLoad_DicomVolumeT_VoxelsVolumeMinMax_Vector_float_Id_VoxelTag_std_string	loadDicomsFolder (os.PathLike|str|bytes path, int maxNumThreads, func_bool_from_float cb='{}')
std_vector_tl_expected_VoxelsLoad_DicomVolumeT_VoxelsVolumeMinMax_FloatGrid_std_string	loadDicomsFolderAsVdb (os.PathLike|str|bytes path, int maxNumThreads, func_bool_from_float cb='{}')
std_vector_tl_expected_VoxelsLoad_DicomVolumeT_VoxelsVolumeMinMax_FloatGrid_std_string	loadDicomsFolderTreeAsVdb (os.PathLike|str|bytes path, int maxNumThreads=4, func_bool_from_float cb='{}')
VdbVolume	loadTiffDir (VoxelsLoad.LoadingTiffSettings settings)
LoadedObjects	makeObjectVoxelsFromDicomFolder (os.PathLike|str|bytes folder, func_bool_from_float callback='{}')

Detailed Description

This is a namespace.

Member Function Documentation

createObjectVoxels()

ObjectVoxels mrmeshpy.VoxelsLoad.createObjectVoxels ( VoxelsLoad.DicomVolumeAsVdb dcm, func_bool_from_float cb = '{}' )

static

converts DicomVolumeAsVdb in ObjectVoxels

findDicomFoldersRecursively()

std_vector_std_filesystem_path mrmeshpy.VoxelsLoad.findDicomFoldersRecursively ( os.PathLike | str | bytes path )

static

returns all the dicom folders in \\p path, searching recursively

findRawParameters()

VoxelsLoad.RawParameters mrmeshpy.VoxelsLoad.findRawParameters ( os.PathLike | str | bytes file )

static

finds raw voxels file and its encoding parameters
\\param file on input: file name probably without suffix with parameters
            on output: if success existing file name

fromAnySupportedFormat()

std_vector_VoxelsVolumeMinMax_FloatGrid mrmeshpy.VoxelsLoad.fromAnySupportedFormat ( os.PathLike | str | bytes file, func_bool_from_float cb = '{}' )

static

Detects the format from file extension and loads voxels from it

fromGav() [1/2]

VdbVolume mrmeshpy.VoxelsLoad.fromGav ( os.PathLike | str | bytes file, func_bool_from_float cb = '{}' )

static

Load voxel from Gav-file with micro CT reconstruction

fromGav() [2/2]

VdbVolume mrmeshpy.VoxelsLoad.fromGav ( typing.Any in_, func_bool_from_float cb = '{}' )

static

Load voxel from Gav-stream with micro CT reconstruction

fromRaw() [1/3]

VdbVolume mrmeshpy.VoxelsLoad.fromRaw ( os.PathLike | str | bytes file, func_bool_from_float cb = '{}' )

static

Load raw voxels file, parsing parameters from name

fromRaw() [2/3]

VdbVolume mrmeshpy.VoxelsLoad.fromRaw ( os.PathLike | str | bytes file, VoxelsLoad.RawParameters params, func_bool_from_float cb = '{}' )

static

Load raw voxels from file with provided parameters

fromRaw() [3/3]

VdbVolume mrmeshpy.VoxelsLoad.fromRaw ( typing.Any in_, VoxelsLoad.RawParameters params, func_bool_from_float cb = '{}' )

static

Load raw voxels from stream with provided parameters;
important on Windows: in stream must be open in binary mode

fromVdb()

std_vector_VoxelsVolumeMinMax_FloatGrid mrmeshpy.VoxelsLoad.fromVdb ( os.PathLike | str | bytes file, func_bool_from_float cb = '{}' )

static

Load all voxel volumes from OpenVDB file

gridFromRaw() [1/3]

FloatGrid mrmeshpy.VoxelsLoad.gridFromRaw ( os.PathLike | str | bytes file, func_bool_from_float cb = '{}' )

static

Load raw voxels file, parsing parameters from name

gridFromRaw() [2/3]

FloatGrid mrmeshpy.VoxelsLoad.gridFromRaw ( os.PathLike | str | bytes file, VoxelsLoad.RawParameters params, func_bool_from_float cb = '{}' )

static

Load raw voxels from file with provided parameters

gridFromRaw() [3/3]

FloatGrid mrmeshpy.VoxelsLoad.gridFromRaw ( typing.Any in_, VoxelsLoad.RawParameters params, func_bool_from_float cb = '{}' )

static

Load raw voxels from stream with provided parameters;
important on Windows: in stream must be open in binary mode

gridsFromAnySupportedFormat()

std_vector_FloatGrid mrmeshpy.VoxelsLoad.gridsFromAnySupportedFormat ( os.PathLike | str | bytes file, func_bool_from_float cb = '{}' )

static

Detects the format from file extension and loads voxels from it

gridsFromVdb() [1/2]

std_vector_FloatGrid mrmeshpy.VoxelsLoad.gridsFromVdb ( os.PathLike | str | bytes file, func_bool_from_float cb = '{}' )

static

gridsFromVdb() [2/2]

std_vector_FloatGrid mrmeshpy.VoxelsLoad.gridsFromVdb ( typing.Any in_, func_bool_from_float cb = '{}' )

static

isDicomFile()

VoxelsLoad.DicomStatus mrmeshpy.VoxelsLoad.isDicomFile ( os.PathLike | str | bytes path, std_string_output seriesUid = None )

static

check if file is a valid DICOM dataset file
\\param seriesUid - if set, the extracted series instance UID is copied to the variable

isDicomFolder()

bool mrmeshpy.VoxelsLoad.isDicomFolder ( os.PathLike | str | bytes dirPath )

static

check if given folder contains at least one DICOM file

loadDicomFile()

VoxelsLoad.DicomVolume mrmeshpy.VoxelsLoad.loadDicomFile ( os.PathLike | str | bytes file, func_bool_from_float cb = '{}' )

static

Loads full volume from single DICOM file (not a slice file) as SimpleVolumeMinMax

loadDicomFileAsVdb()

VoxelsLoad.DicomVolumeAsVdb mrmeshpy.VoxelsLoad.loadDicomFileAsVdb ( os.PathLike | str | bytes file, func_bool_from_float cb = '{}' )

static

Loads full volume from single DICOM file (not a slice file) as VdbVolume

loadDicomFolder()

VoxelsLoad.DicomVolume mrmeshpy.VoxelsLoad.loadDicomFolder ( os.PathLike | str | bytes path, int maxNumThreads, func_bool_from_float cb = '{}' )

static

Loads one volume from DICOM files located in given folder as SimpleVolumeMinMax

loadDicomFolderAsVdb()

VoxelsLoad.DicomVolumeAsVdb mrmeshpy.VoxelsLoad.loadDicomFolderAsVdb ( os.PathLike | str | bytes path, int maxNumThreads, func_bool_from_float cb = '{}' )

static

Loads one volume from DICOM files located in given folder as VdbVolume

loadDicomsFolder()

std_vector_tl_expected_VoxelsLoad_DicomVolumeT_VoxelsVolumeMinMax_Vector_float_Id_VoxelTag_std_string mrmeshpy.VoxelsLoad.loadDicomsFolder ( os.PathLike | str | bytes path, int maxNumThreads, func_bool_from_float cb = '{}' )

static

Loads all volumes from DICOM files located in given folder as a number of SimpleVolumeMinMax

loadDicomsFolderAsVdb()

std_vector_tl_expected_VoxelsLoad_DicomVolumeT_VoxelsVolumeMinMax_FloatGrid_std_string mrmeshpy.VoxelsLoad.loadDicomsFolderAsVdb ( os.PathLike | str | bytes path, int maxNumThreads, func_bool_from_float cb = '{}' )

static

Loads all volumes from DICOM files located in given folder as a number of VdbVolume

loadDicomsFolderTreeAsVdb()

std_vector_tl_expected_VoxelsLoad_DicomVolumeT_VoxelsVolumeMinMax_FloatGrid_std_string mrmeshpy.VoxelsLoad.loadDicomsFolderTreeAsVdb ( os.PathLike | str | bytes path, int maxNumThreads = 4, func_bool_from_float cb = '{}' )

static

Loads every subfolder with DICOM volume as new object

loadTiffDir()

VdbVolume mrmeshpy.VoxelsLoad.loadTiffDir ( VoxelsLoad.LoadingTiffSettings settings )

static

Load voxels from a set of TIFF files

makeObjectVoxelsFromDicomFolder()

LoadedObjects mrmeshpy.VoxelsLoad.makeObjectVoxelsFromDicomFolder ( os.PathLike | str | bytes folder, func_bool_from_float callback = '{}' )

static

Loads 3D volumetric data from dicom-files in given folder, and converts them into an ObjectVoxels

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The documentation for this class was generated from the following file:

• mrmeshpy.pyi